Export every read in a Sequencher project as an .ab1 file

Export every read in a Sequencher project as an .ab1 file

Usage

spf_to_abif(path, out_dir, basecaller = FALSE, deleted = FALSE)

Arguments

path

Path to a Sequencher project file.

out_dir

Directory to write the .ab1 files to. It is created if needed.

basecaller

If TRUE, also write the base calls, quality scores and peak positions to the base-caller tags PBAS2, PCON2 and PLOC2.

deleted

If TRUE, also return reads deleted from the project whose data is still in the file.

Value

The paths of the files written, invisibly. Each file takes the read's name in read_spf(), so a read whose name repeats another gets a suffix (_2, _3, ...) and a warning, and no file overwrites another.

See also

read_spf(), write_abif(), spf_format

Examples

spf <- "project.SPF"
if (file.exists(spf)) spf_to_abif(spf, tempdir())