Reads 'Chromatotec' .Chrom files.
Usage
read_chromatotec(
path,
what = c("chrom", "peak_table"),
format_out = c("matrix", "data.frame", "data.table"),
data_format = c("wide", "long"),
read_metadata = TRUE,
metadata_format = c("chromconverter", "raw"),
collapse = TRUE
)
Arguments
- path
Path to 'Chromatotec' .Chrom file.
- what
Whether to extract chromatograms (chrom) and/or
peak_table data. Accepts multiple arguments.
- format_out
R format. Either matrix, data.frame, or
data.table.
- data_format
Either wide (default) or long format.
- read_metadata
Whether to read metadata from file.
- metadata_format
Format to output metadata. Either chromconverter
or raw.
- collapse
Logical. Whether to collapse lists that only contain a single
element.
Value
A chromatogram and/or peak table from the specified
path, according to the value of what. Chromatograms are
returned in the format specified by format_out.
Note
This function is a work in progress and the accuracy of the results is
not guaranteed.
Examples
if (FALSE) { # \dontrun{
read_chromatotec(path)
} # }
