Read 'Chromatotec' file

Reads 'Chromatotec' .Chrom files.

Usage

read_chromatotec(
  path,
  what = c("chrom", "peak_table"),
  format_out = c("matrix", "data.frame", "data.table"),
  data_format = c("wide", "long"),
  read_metadata = TRUE,
  metadata_format = c("chromconverter", "raw"),
  collapse = TRUE
)

Arguments

path

The path to 'Chromatotec' .Chrom file.

what

Whether to extract chromatograms (chrom) and/or peak_table data. Accepts multiple arguments.

format_out

Class of output. Either matrix, data.frame, or data.table.

data_format

Whether to return data in wide (default) or long format.

read_metadata

Logical. Whether to attach metadata. Defaults to TRUE.

metadata_format

Format to output metadata. Either chromconverter or raw.

collapse

Logical. Whether to collapse lists that only contain a single element. Defaults to TRUE.

Value

A chromatogram and/or peak table from the specified path, according to the value of what. Chromatograms are returned in the format specified by format_out.

Note

This function is a work in progress. As such, the accuracy of the results is not guaranteed.

Author

Ethan Bass

Examples

if (FALSE) { # \dontrun{
read_chromatotec(path)
} # }