Package index • chromConverter

Core functions

read_chroms(): Read Chromatograms
read_peaklist(): Read peak lists
extract_metadata(): Extract metadata
add_metadata(): Add metadata to a list of chromatograms
write_chroms(): Write chromatograms

Agilent parsers

read_agilent_amx(): Read Agilent AMX method file
read_agilent_d(): Read files from 'Agilent ChemStation' .D directories
read_agilent_dx(): Read 'Agilent' DX files
read_agilent_rslt(): Read files from 'Agilent' .rslt directories
read_chemstation_ch(): Read 'Agilent ChemStation' CH files
read_chemstation_csv(): Read 'Agilent ChemStation' CSV files
read_chemstation_logs(): Read 'Agilent ChemStation' log files
read_chemstation_ms(): Read 'Agilent ChemStation' MS files
read_chemstation_reports(): Read 'Agilent ChemStation' report files
read_chemstation_uv(): Read 'Agilent ChemStation' DAD files
read_acaml(): Read 'Agilent' ACAML files

Shimadzu parsers

read_shimadzu(): Read 'Shimadzu' ASCII
read_shimadzu_gcd(): Read 'Shimadzu' GCD
read_shimadzu_lcd(): Read 'Shimadzu' LCD
read_shimadzu_qgd(): Read 'Shimadzu' QGD files

Waters parsers

read_waters_arw(): Read 'Waters' ASCII (.arw)
read_waters_raw(): Read 'Waters' RAW

Other miscellaneous parsers

read_asm(): Read 'Allotrope Simple Model' (ASM) files
read_cdf(): Read CDF
read_chromatotec(): Read 'Chromatotec' file
read_chromeleon(): Read 'Chromeleon' ASCII files
read_mdf(): Read 'Lumex' MDF
read_mzml(): Read mzML files
read_varian_sms(): Read 'Varian' SMS
read_varian_peaklist(): Read 'Varian' peak list

Bindings to external parsers

call_entab(): Call Entab
call_openchrom(): Parse files with OpenChrom
configure_openchrom(): Configure 'OpenChrom' parser
read_thermoraw(): Read ThermoRaw
call_rainbow(): Call 'rainbow' parsers
sp_converter(): Converter for 'Agilent MassHunter' UV files
uv_converter(): Converter for 'Agilent ChemStation' UV files

Write functions

write_andi_chrom(): Write ANDI chrom CDF file from chromatogram
write_andi_ms(): Write ANDI MS CDF file from chromatogram
write_mzml(): Write mzML

Methods

print(<chrom_list>): Print a chrom_list object
summary(<chrom_list>): Summarize a chrom_list object
subset(<chrom_list>): Select chromatograms by their metadata