Call Entab

Converts chromatography data files using entab parsers. 'entab' detects the file format itself. Mass spectra are always returned in long format.

Usage

call_entab(
  path,
  data_format = c("wide", "long"),
  format_out = c("matrix", "data.frame", "data.table"),
  format_in = "",
  read_metadata = TRUE,
  metadata_format = c("chromconverter", "raw")
)

Arguments

path

Path to file.

data_format

Whether to return data in wide (default) or long format.

format_out

Class of output. Either matrix, data.frame, or data.table.

format_in

Format of the file, used only to read the metadata that 'entab' does not: those of 'ChemStation' formats (any value containing chemstation) and of masshunter_dad. Defaults to "".

read_metadata

Logical. Whether to attach metadata. Defaults to TRUE.

metadata_format

Format to output metadata. Either chromconverter (standardized field names) or raw (vendor field names, unmapped).

Value

A chromatogram in the format specified by the format_out and data_format arguments.

See also

Other external parsers: call_openchrom(), call_rainbow(), read_thermoraw(), sp_converter(), uv_converter()

Examples

if (FALSE) { # \dontrun{
call_entab("path/to/file.uv", format_in = "chemstation_uv")
} # }