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All functions

Sa
HPLC-DAD data of goldenrod root extracts.
Sa_pr
HPLC-DAD data of goldenrod root extracts.
Sa_warp
HPLC-DAD data of goldenrod root extracts.
attach_metadata()
Attach experimental metadata
attach_ref_spectra()
Attach reference spectra
boxplot(<peak_table>)
Make boxplot of variables from peak table.
chromatographR-package chromatographR
chromatographR
cluster_spectra()
Cluster peaks by spectral similarity.
combine_peaks()
Combine peaks in peak table
correct_peaks()
Correct peak positions according to a ptw warping model
correct_rt()
Correct retention time
filter_peaks()
Filter peak lists
filter_peaktable()
Filter peak table
find_noise()
Define noise spectra based on specified threshold
find_peaks()
Find peaks in chromatographic profile
fit_peaks()
Fit chromatographic peaks to an exponential-gaussian hybrid or gaussian profile
get_agilent_threshold()
Calculate purity thresholds
get_noise_variance()
Calculate variance of noise regions
get_peaks()
Get peak list.
get_peaktable()
Convert peak list into an ordered peak table.
get_purity()
Calculate mean peak purity
get_purity_values()
Calculate peak purity values
get_spectral_similarity()
Calculate spectral similarity
load_chroms()
Import chromatograms.
mirror_plot()
Make mirror plot from peak table.
normalize_data()
Normalize peak table or chromatograms
pk_tab
Goldenrod peak table
plot(<peak_list>)
Plot fitted peak shapes.
plot(<peak_table>)
Plot spectrum from peak table
plot(<ptw_list>)
Plot PTW alignments
plot_all_spectra()
Plot all spectra for chosen peak.
plot_spectrum()
Plot spectrum from peak table
preprocess()
Preprocess time/wavelength data
reshape_chroms()
Reshapes list of chromatograms from wide to long format
savgol()
Savitsky Golay Smoothing from pracma
scan_chrom()
Plot spectra by clicking on the chromatogram
trim_peak()
Trim peak
write_peaktable()
Export peak table