Package index • chromatographR

Package overview

chromatographR chromatographR-package: chromatographR: Chromatographic Data Analysis Toolkit

plot_all_spectra(): Plot all spectra for chosen peak
plot_baseline(): Plot an estimated baseline
plot_chrom_contour(): Plot a chromatogram as a contour plot
plot_chroms(): Plot traces from list of chromatograms
plot_chroms_heatmap(): Plot chromatograms as heatmap
plot_spectrum(): Plot spectrum from peak table
plot_spectrum_inset(): Plot a chromatogram or chromatograms with an inset UV spectrum
annotate_peaks(): Annotate peaks on a chromatogram
boxplot(<peak_table>): Make boxplot from peak table
mirror_plot(): Make mirror plot from peak table
scan_chrom(): Plot spectra by clicking on the chromatogram
plot(<chrom_list>): Plot a list of chromatograms
plot(<matched_peak_list>) plot(<matched_peak_list_set>): Plot matched peak pairs
plot(<peak_list>): Overlay fitted peak shapes on chromatograms
plot(<peak_table>): Plot spectrum from peak table
plot(<ptw_list>): Plot PTW alignments

print(<peak_table>): Print peak table
print(<peak_list>): Print peak list
print(<matched_peak_list>): Print matched peak list
print(<matched_peak_list_set>): Print a set of matched peak lists
summary(<peak_table>): Summarize peak table
`[`(<peak_table>): Subset peak table
`[`(<peak_list>): Subset peak list
`[`(<matched_peak_list>): Subset matched peak list
dim(<peak_table>): Return dimensions of a peak_table object
head(<peak_table>) tail(<peak_table>): Return first or last parts of a peak_table
row.names(<peak_table>): Return row names from a peak_table object
subset(<peak_table>): Subset peak table